3SL9 Signaling Protein, Protein Binding date Jun 24, 2011
title X-Ray Structure Of Beta Catenin In Complex With Bcl9
authors D.Gupta, M.Bienz
compound source
Molecule: Catenin Beta-1
Chain: A, B, E, G
Synonym: Beta-Catenin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Beta Catenin, Ctnnb, Ctnnb1, Oksw-Cl.35, Pro2286
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: B-Cell Clllymphoma 9 Protein
Chain: C, D, F, H
Synonym: B-Cell Lymphoma 9 Protein, Bcl-9, Protein Legless
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl9
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.194 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.890 80.700 87.940 90.00 102.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand EDO, GOL, IMD, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, B, G


F, H, C, D


Primary referenceAn intrinsically labile alpha-helix abutting the BCL9-binding site of beta-catenin is required for its inhibition by carnosic acid., de la Roche M, Rutherford TJ, Gupta D, Veprintsev DB, Saxty B, Freund SM, Bienz M, Nat Commun. 2012 Feb 21;3:680. doi: 10.1038/ncomms1680. PMID:22353711
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3sl9.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3sl9.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (3sl9.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (3sl9.pdb4.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3SL9
  • CSU: Contacts of Structural Units for 3SL9
  • Structure Factors (833 Kb)
  • Retrieve 3SL9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SL9 from S2C, [Save to disk]
  • Re-refined 3sl9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SL9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SL9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SL9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sl9_E] [3sl9_A] [3sl9_B] [3sl9_G] [3sl9_F] [3sl9_H] [3sl9_D] [3sl9_C] [3sl9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SL9: [ARM ] by SMART
  • Other resources with information on 3SL9
  • Community annotation for 3SL9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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