OCA Atlas for 3SMR

3SMR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, NP7, UNX BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A, D, C

Primary reference

Small-molecule inhibition of MLL activity by disruption of its interaction with WDR5., Senisterra G, Wu H, Allali-Hassani A, Wasney GA, Barsyte-Lovejoy D, Dombrovski L, Dong A, Nguyen KT, Smil D, Bolshan Y, Hajian T, He H, Seitova A, Chau I, Li F, Poda G, Couture JF, Brown PJ, Al-Awar R, Schapira M, Arrowsmith CH, Vedadi M, Biochem J. 2013 Jan 1;449(1):151-9. doi: 10.1042/BJ20121280. PMID:22989411

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (419 Kb) [Save to disk]

Biological Unit Coordinates (3smr.pdb1.gz) 107 Kb

Biological Unit Coordinates (3smr.pdb2.gz) 105 Kb

Biological Unit Coordinates (3smr.pdb3.gz) 105 Kb

Biological Unit Coordinates (3smr.pdb4.gz) 107 Kb

LPC: Ligand-Protein Contacts for 3SMR

CSU: Contacts of Structural Units for 3SMR

Structure Factors (4545 Kb)

Retrieve 3SMR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3SMR from S2C, [Save to disk]

Re-refined 3smr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SMR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3smr] [3smr_A] [3smr_B] [3smr_C] [3smr_D]

SWISS-PROT database:

Domain found in 3SMR: [WD40 ] by SMART

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