3SMZ Rna Binding Protein date Jun 28, 2011
title Human Raver1 Rrm1-3 Domains (Residues 39-320)
authors E.S.Rangarajan, J.H.Lee, T.Izard
compound source
Molecule: Ribonucleoprotein Ptb-Binding 1
Chain: A
Fragment: Tandem Rrm Domains (Unp Residues 39-320)
Synonym: Protein Raver-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1978, Raver1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 65
R_factor 0.185 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.020 104.020 50.420 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.99 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceApo raver1 structure reveals distinct RRM domain orientations., Rangarajan ES, Lee JH, Izard T, Protein Sci. 2011 Jun 1. doi: 10.1002/pro.664. PMID:21633983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3smz.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 3SMZ
  • CSU: Contacts of Structural Units for 3SMZ
  • Structure Factors (782 Kb)
  • Retrieve 3SMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SMZ from S2C, [Save to disk]
  • Re-refined 3smz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SMZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3SMZ, from MSDmotif at EBI
  • Fold representative 3smz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3smz_A] [3smz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SMZ: [RRM ] by SMART
  • Other resources with information on 3SMZ
  • Community annotation for 3SMZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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