3SO2	Hydrolase	date	Jun 29, 2011
title	Chlorella Dutpase
authors	L.Badalucco, I.Poudel, C.Natarajan, M.Yamanishi, H.Moriyama
compound		source
Molecule: Putative Uncharacterized Protein Chain: A Fragment: Unp Residues 28-171 Ec: 3.6.1.23 Engineered: Yes		Organism_scientific: Chlorella Variabilis Organism_taxid: 554065 Gene: Chlncdraft_27939 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
symmetry	Space Group: H 3	R_factor 0.250 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.910 66.910 93.630 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.64 Å
ligand		enzyme	Hydrolase E.C.3.6.1.23 BRENDA
Gene	CHLNCDRAFT
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallization of Chlorella deoxyuridine triphosphatase., Badalucco L, Poudel I, Yamanishi M, Natarajan C, Moriyama H, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Dec 1;67(Pt 12):1599-602. , Epub 2011 Nov 26. PMID:22139176

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (3so2.pdb1.gz) 123 Kb CSU: Contacts of Structural Units for 3SO2 Structure Factors (351 Kb) Retrieve 3SO2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SO2 from S2C, [Save to disk] Re-refined 3so2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SO2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SO2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SO2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3so2] [3so2_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3SO2

Community annotation for 3SO2 at PDBWiki (http://pdbwiki.org)

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