3SOR Hydrolase Hydrolase Inhibitor date Jun 30, 2011
title Factor Xia In Complex With A Clorophenyl-Tetrazole Inhibitor
authors B.Kazemier, A.Oubrie
compound source
Molecule: Coagulation Factor Xi
Chain: A
Synonym: Fxi, Plasma Thromboplastin Antecedent, Pta, Coagul Factor Xia Heavy Chain, Coagulation Factor Xia Light Chain;
Ec: 3.4.21.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F11
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.988 60.069 67.512 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CIT, O58 enzyme Hydrolase E.C.3.4.21.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution crystal structures of factor XIa coagulation factor in complex with nonbasic high-affinity synthetic inhibitors., Fradera X, Kazemier B, Carswell E, Cooke A, Oubrie A, Hamilton W, Dempster M, Krapp S, Nagel S, Jestel A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Apr 1;68(Pt 4):404-8. Epub, 2012 Mar 27. PMID:22505407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3sor.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3SOR
  • CSU: Contacts of Structural Units for 3SOR
  • Structure Factors (445 Kb)
  • Retrieve 3SOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SOR from S2C, [Save to disk]
  • Re-refined 3sor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SOR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sor_A] [3sor]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SOR: [Tryp_SPc ] by SMART
  • Other resources with information on 3SOR
  • Community annotation for 3SOR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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