3SOX	Ligase	date	Jun 30, 2011
title	Structure Of Uhrf1 Phd Finger In The Free Form
authors	E.Rajakumara, D.J.Patel
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1 Chain: A, B Fragment: Uhrf1 (Unp Residues 298-367) Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda, Nucl Protein 95, Nuclear Zinc Finger Protein Np95, Hunp95, Ring Protein 106, Transcription Factor Icbp90, Ubiquitin-Like Ph Finger Domain-Containing Protein 1, Ubiquitin-Like-Containi Ring Finger Domains Protein 1; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Icbp90, Np95, Rnf106, Uhrf1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Rosetta2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: I 21 21 21	R_factor 0.248 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.746 53.805 128.476 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression., Rajakumara E, Wang Z, Ma H, Hu L, Chen H, Lin Y, Guo R, Wu F, Li H, Lan F, Shi YG, Xu Y, Patel DJ, Shi Y, Mol Cell. 2011 Jul 22;43(2):275-84. PMID:21777816

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk] Biological Unit Coordinates (3sox.pdb1.gz) 11 Kb Biological Unit Coordinates (3sox.pdb2.gz) 11 Kb Biological Unit Coordinates (3sox.pdb3.gz) 20 Kb Biological Unit Coordinates (3sox.pdb4.gz) 20 Kb LPC: Ligand-Protein Contacts for 3SOX CSU: Contacts of Structural Units for 3SOX Structure Factors (44 Kb) Retrieve 3SOX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SOX from S2C, [Save to disk] Re-refined 3sox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SOX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SOX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SOX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sox_A] [3sox_B] [3sox] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3SOX: [PHD] [RING ] by SMART

Other resources with information on 3SOX

Community annotation for 3SOX at PDBWiki (http://pdbwiki.org)

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