3SUI Calcium-Binding Protein date Jul 11, 2011
title Crystal Structure Of Ca2+-Calmodulin In Complex With A Trpv1 Terminal Peptide
authors S.Y.Lau, R.Gaudet
compound source
Molecule: Calmodulin
Chain: A
Synonym: Cam
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calm, Calm1, Calm2, Calm3, Calml2, Cam, Cam1, Cam2, C Camb, Camc, Camiii;
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21

Molecule: Transient Receptor Potential Cation Channel Subfa Member 1;
Chain: B
Fragment: Unp Residues 767-801
Synonym: Trpv1, Capsaicin Receptor, Osm-9-Like Trp Channel Vanilloid Receptor 1, Vanilloid Receptor Type 1-Like;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Trpv1, Vr1, Vr1l
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalc2
symmetry Space Group: P 61 2 2
R_factor 0.192 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.681 41.681 341.533 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand CA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDistinct properties of Ca2+-calmodulin binding to N- and C-terminal regulatory regions of the TRPV1 channel., Lau SY, Procko E, Gaudet R, J Gen Physiol. 2012 Nov;140(5):541-55. doi: 10.1085/jgp.201210810. PMID:23109716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3sui.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3SUI
  • CSU: Contacts of Structural Units for 3SUI
  • Structure Factors (98 Kb)
  • Retrieve 3SUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SUI from S2C, [Save to disk]
  • Re-refined 3sui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SUI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SUI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sui_A] [3sui] [3sui_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SUI: [EFh ] by SMART
  • Other resources with information on 3SUI
  • Community annotation for 3SUI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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