3SZ1	Transcription	date	Jul 18, 2011
title	Human Ppar Gamma Ligand Binding Domain In Complex With Luteo Myristic Acid
authors	A.C.Puhl, A.Bernardes, I.Polikarpov
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.207 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.260 62.150 119.130 90.00 101.67 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	KNA, LU2, MYR	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mode of PPARgamma Activation by Luteolin., Puhl AC, Bernardes A, Silveira RL, Yuan J, Campos JL, Saidemberg DM, Palma MS, Cvoro A, Ayers SD, Webb P, Reinach PS, Skaf MS, Polikarpov I, Mol Pharmacol. 2012 Mar 5. PMID:22391103

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3sz1.pdb1.gz) 44 Kb Biological Unit Coordinates (3sz1.pdb2.gz) 45 Kb LPC: Ligand-Protein Contacts for 3SZ1 CSU: Contacts of Structural Units for 3SZ1 Structure Factors (1600 Kb) Retrieve 3SZ1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SZ1 from S2C, [Save to disk] Re-refined 3sz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SZ1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3SZ1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SZ1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sz1_A] [3sz1] [3sz1_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3SZ1: [HOLI ] by SMART

Other resources with information on 3SZ1

Community annotation for 3SZ1 at PDBWiki (http://pdbwiki.org)

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