3T1E Hydrolase date Jul 21, 2011
title The Structure Of The Newcastle Disease Virus Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A 4-Helix Bundle Stal
authors P.Yuan, K.Swanson, G.P.Leser, R.G.Paterson, R.A.Lamb, T.S.Jardetz
compound source
Molecule: Hemagglutinin-Neuraminidase
Chain: A, B, E, F
Fragment: Ndv Hn Ectodomain
Ec: 3.2.1.18
Engineered: Yes
Organism_scientific: Newcastle Disease Virus
Organism_common: Ndv
Organism_taxid: 11177
Strain: Chickenaustralia-Victoria32
Gene: Hn
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Hi5, Sf Plus
symmetry Space Group: P 43 21 2
R_factor 0.248 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.292 138.292 167.338 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Hydrolase E.C.3.2.1.18 BRENDA
note 3T1E is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B


Primary referenceStructure of the Newcastle disease virus hemagglutinin-neuraminidase (HN) ectodomain reveals a four-helix bundle stalk., Yuan P, Swanson KA, Leser GP, Paterson RG, Lamb RA, Jardetzky TS, Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):14920-5. Epub 2011 Aug 22. PMID:21873198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (323 Kb) [Save to disk]
  • Biological Unit Coordinates (3t1e.pdb1.gz) 609 Kb
  • CSU: Contacts of Structural Units for 3T1E
  • Structure Factors (184 Kb)
  • Retrieve 3T1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T1E from S2C, [Save to disk]
  • Re-refined 3t1e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T1E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T1E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t1e_B] [3t1e_A] [3t1e_F] [3t1e] [3t1e_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T1E
  • Community annotation for 3T1E at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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