OCA Atlas for 3T1Y

3T1Y

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

12A, 70U, MG, PAR, PSU, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
V

Primary reference

Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism., Vendeix FA, Murphy FV 4th, Cantara WA, Leszczynska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF, J Mol Biol. 2011 Dec 29. PMID:22227389

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (941 Kb) [Save to disk]

Biological Unit Coordinates (3t1y.pdb1.gz) 927 Kb

LPC: Ligand-Protein Contacts for 3T1Y

CSU: Contacts of Structural Units for 3T1Y

Structure Factors (3078 Kb)

Retrieve 3T1Y in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3T1Y from S2C, [Save to disk]

Re-refined 3t1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T1Y in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t1y] [3t1y_A] [3t1y_B] [3t1y_C] [3t1y_D] [3t1y_E] [3t1y_F] [3t1y_G] [3t1y_H] [3t1y_I] [3t1y_J] [3t1y_K] [3t1y_L] [3t1y_M] [3t1y_N] [3t1y_O] [3t1y_P] [3t1y_Q] [3t1y_R] [3t1y_S] [3t1y_T] [3t1y_V] [3t1y_W] [3t1y_X]

SWISS-PROT database:

Domains found in 3T1Y: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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