OCA Atlas for 3T3P

3T3P

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, CA, CL, GOL, MAN, MG, NAG, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D
C, A

Primary reference

Structure-Guided Design of a High-Affinity Platelet Integrin alphaIIbbeta3 Receptor Antagonist That Disrupts Mg2+ Binding to the MIDAS., Zhu J, Choi WS, McCoy JG, Negri A, Zhu J, Naini S, Li J, Shen M, Huang W, Bougie D, Rasmussen M, Aster R, Thomas CJ, Filizola M, Springer TA, Coller BS, Sci Transl Med. 2012 Mar 14;4(125):125ra32. PMID:22422993

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (874 Kb) [Save to disk]

Biological Unit Coordinates (3t3p.pdb1.gz) 433 Kb

Biological Unit Coordinates (3t3p.pdb2.gz) 438 Kb

LPC: Ligand-Protein Contacts for 3T3P

CSU: Contacts of Structural Units for 3T3P

Structure Factors (1467 Kb)

Retrieve 3T3P in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3T3P from S2C, [Save to disk]

Re-refined 3t3p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T3P in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t3p] [3t3p_A] [3t3p_B] [3t3p_C] [3t3p_D] [3t3p_E] [3t3p_F] [3t3p_H] [3t3p_L]

SWISS-PROT database:

Domains found in 3T3P: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

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