3T41 Hydrolase date Jul 25, 2011
title 1.95 Angstrom Resolution Crystal Structure Of Epidermin Lead Processing Serine Protease (Epip) S393a Mutant From Staphyl Aureus
authors G.Minasov, M.Kuhn, J.Ruan, A.Halavaty, L.Shuvalova, I.Dubrovska, J F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Epidermin Leader Peptide Processing Serine Protea
Chain: A, B
Fragment: Sequence Database Residues 28-457
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 93062
Strain: Col
Gene: Epip, Sacol1874
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 15b
symmetry Space Group: P 1 21 1
R_factor 0.166 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.234 68.473 97.723 90.00 91.66 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CA, CL enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (3t41.pdb1.gz) 155 Kb
  • Biological Unit Coordinates (3t41.pdb2.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 3T41
  • CSU: Contacts of Structural Units for 3T41
  • Structure Factors (1138 Kb)
  • Retrieve 3T41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T41 from S2C, [Save to disk]
  • Re-refined 3t41 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T41
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T41, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t41_A] [3t41] [3t41_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T41
  • Community annotation for 3T41 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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