3T4F Biosynthetic Protein date Jul 25, 2011
title Crystal Structure Of A Kge Collagen Mimetic Peptide At 1.68
authors J.A.Fallas, J.Dong, M.D.Miller, Y.J.Tao, J.D.Hartgerink
compound source
Molecule: Collagen Mimetic Peptide
Chain: A, B, C, D, E, F
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_common: Artificial Sequence
Organism_taxid: 32630
Other_details: Fmoc Solid Phase Peptide Chemistry With N-Te Acetylation And C-Terminal Amidation
symmetry Space Group: P 1
R_factor 0.101 R_Free 0.141
crystal
cell
length a length b length c angle alpha angle beta angle gamma
14.026 23.815 67.657 95.01 94.69 94.86
method X-Ray Diffractionresolution 1.68 Å
ligand ACE, HYP, NH2 enzyme
Primary referenceStructural insights into charge pair interactions in triple helical collagen-like proteins., Fallas JA, Dong J, Tao YJ, Hartgerink JD, J Biol Chem. 2012 Mar 9;287(11):8039-47. Epub 2011 Dec 17. PMID:22179819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3t4f.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (3t4f.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3T4F
  • CSU: Contacts of Structural Units for 3T4F
  • Structure Factors (112 Kb)
  • Retrieve 3T4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T4F from S2C, [Save to disk]
  • Re-refined 3t4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3T4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3T4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T4F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t4f_C] [3t4f_A] [3t4f] [3t4f_B] [3t4f_F] [3t4f_E] [3t4f_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3T4F
  • Community annotation for 3T4F at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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