3T5U Lyase Lyase Inhibitor date Jul 28, 2011
title Crystal Structure Of The Human Carbonic Anhydrase II In Comp N-Hydroxy Benzenesulfonamide
authors A.Di Fiore, A.Maresca, V.Alterio, C.T.Supuran, G.De Simone
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.260 41.540 72.090 90.00 104.43 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand A09, GOL, MBO, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCarbonic anhydrase inhibitors: X-ray crystallographic studies for the binding of N-substituted benzenesulfonamides to human isoform II., Di Fiore A, Maresca A, Alterio V, Supuran CT, De Simone G, Chem Commun (Camb). 2011 Nov 14;47(42):11636-8. Epub 2011 Sep 26. PMID:21952494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3t5u.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3T5U
  • CSU: Contacts of Structural Units for 3T5U
  • Structure Factors (377 Kb)
  • Retrieve 3T5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T5U from S2C, [Save to disk]
  • Re-refined 3t5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3T5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3T5U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T5U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t5u_A] [3t5u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3T5U: [Carb_anhydrase ] by SMART
    • Other resources with information on 3T5U
  • Community annotation for 3T5U at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science