3TDA	Oxidoreductase Oxidoreductase Inhibitor	date	Aug 10, 2011
title	Competitive Replacement Of Thioridazine By Prinomastat In Cr Cytochrome P450 2d6
authors	A.Wang, C.D.Stout, E.F.Johnson
compound		source
Molecule: Cytochrome P450 2d6 Chain: A, B, C, D Fragment: Unp Residues 34-497 Synonym: Cypiid6, Cytochrome P450-Db1, Debrisoquine 4-Hydro Ec: 1.14.14.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cyp2d6, Cyp2dl1 Expression_system: Escherichia Coli Expression_system_taxid: 668369 Expression_system_strain: Dh5alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcwori
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.050 192.740 247.460 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.67 Å
ligand	HEM, PN0, ZN	enzyme	Oxidoreductase E.C.1.14.14.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Contributions of Ionic Interactions and Protein Dynamics to Cytochrome P450 2D6 (CYP2D6)Substrate and Inhibitor Binding., Wang A, Stout CD, Zhang Q, Johnson EF, J Biol Chem. 2015 Jan 1. pii: jbc.M114.627661. PMID:25555909

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk] Biological Unit Coordinates (3tda.pdb1.gz) 79 Kb Biological Unit Coordinates (3tda.pdb2.gz) 78 Kb Biological Unit Coordinates (3tda.pdb3.gz) 79 Kb Biological Unit Coordinates (3tda.pdb4.gz) 77 Kb LPC: Ligand-Protein Contacts for 3TDA CSU: Contacts of Structural Units for 3TDA Structure Factors (672 Kb) Retrieve 3TDA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TDA from S2C, [Save to disk] Re-refined 3tda structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TDA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TDA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TDA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tda_C] [3tda] [3tda_B] [3tda_D] [3tda_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3TDA

Community annotation for 3TDA at PDBWiki (http://pdbwiki.org)

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