OCA Atlas for 3TDH

3TDH

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AMP

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C	protein kinase regulator act... protein serine/threonine kin...

Primary reference

ADP Regulates SNF1, the Saccharomyces cerevisiae Homolog of AMP-Activated Protein Kinase., Mayer FV, Heath R, Underwood E, Sanders MJ, Carmena D, McCartney RR, Leiper FC, Xiao B, Jing C, Walker PA, Haire LF, Ogrodowicz R, Martin SR, Schmidt MC, Gamblin SJ, Carling D, Cell Metab. 2011 Nov 2;14(5):707-14. Epub 2011 Oct 20. PMID:22019086

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]

Biological Unit Coordinates (3tdh.pdb1.gz) 92 Kb

LPC: Ligand-Protein Contacts for 3TDH

CSU: Contacts of Structural Units for 3TDH

Structure Factors (630 Kb)

Retrieve 3TDH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3TDH from S2C, [Save to disk]

Re-refined 3tdh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TDH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tdh] [3tdh_A] [3tdh_B] [3tdh_C]

SWISS-PROT database:

Domains found in 3TDH: [AMPKBI] [CBS ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]