3TH5	Signaling Protein	date	Aug 18, 2011
title	Crystal Structure Of Wild-Type Rac1
authors	B.H.Ha, T.J.Boggon
compound		source
Molecule: Ras-Related C3 Botulinum Toxin Substrate 1 Chain: A, B Fragment: Unp Residues 2-177 Synonym: Cell Migration-Inducing Gene 5 Protein, Ras-Like P Tc25, P21-Rac1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rac1, Tc25, Mig5 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Modified Pet-28
symmetry	Space Group: P 1 21 1	R_factor 0.229 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.925 97.851 51.733 90.00 96.59 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	GNP, MG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma., Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R, Nat Genet. 2012 Jul 29. doi: 10.1038/ng.2359. PMID:22842228

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (3th5.pdb1.gz) 60 Kb Biological Unit Coordinates (3th5.pdb2.gz) 59 Kb LPC: Ligand-Protein Contacts for 3TH5 CSU: Contacts of Structural Units for 3TH5 Structure Factors (261 Kb) Retrieve 3TH5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TH5 from S2C, [Save to disk] Re-refined 3th5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TH5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TH5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TH5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3th5] [3th5_B] [3th5_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3TH5: [RHO ] by SMART

Other resources with information on 3TH5

Community annotation for 3TH5 at PDBWiki (http://pdbwiki.org)

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