3TM4 Transferase date Aug 31, 2011
title Crystal Structure Of Trm14 From Pyrococcus Furiosus In Compl Adenosylmethionine
authors M.Fislage, M.Roovers, I.Tuszynska, J.M.Bujnicki, L.Droogmans, W.V
compound source
Molecule: Trna (Guanine N2-)-Methyltransferase Trm14
Chain: A, B
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 186497
Strain: Atcc 43587 Dsm 3638 Jcm 8422 Vc1
Gene: Pf1002
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.080 45.170 121.430 90.00 91.79 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand SAM enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life., Fislage M, Roovers M, Tuszynska I, Bujnicki JM, Droogmans L, Versees W, Nucleic Acids Res. 2012 Feb 22. PMID:22362751
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (3tm4.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (3tm4.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3TM4
  • CSU: Contacts of Structural Units for 3TM4
  • Structure Factors (948 Kb)
  • Retrieve 3TM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TM4 from S2C, [Save to disk]
  • Re-refined 3tm4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TM4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TM4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tm4_B] [3tm4] [3tm4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TM4: [THUMP ] by SMART
  • Other resources with information on 3TM4
  • Community annotation for 3TM4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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