3TMC	Hydrolase,Signaling Protein	date	Aug 31, 2011
title	Bd1817, A Hdg"Y"P Protein From Bdellovibrio Bacteriovorus
authors	A.L.Lovering
compound		source
Molecule: Uncharacterized Protein Chain: A, B Synonym: Bd1817 Engineered: Yes		Organism_scientific: Bdellovibrio Bacteriovorus Organism_taxid: 264462 Strain: Hd100 Gene: Bd1817 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 1	R_factor 0.210 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.100 49.401 78.372 73.17 75.90 67.34
method	X-Ray Diffraction	resolution	1.55 Å
ligand	DMS, FE, PO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases., Lovering AL, Capeness MJ, Lambert C, Hobley L, Sockett RE, MBio. 2011 Oct 11;2(5). pii: e00163-11. doi: 10.1128/mBio.00163-11. Print 2011. PMID:21990613

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk] Biological Unit Coordinates (3tmc.pdb1.gz) 97 Kb Biological Unit Coordinates (3tmc.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 3TMC CSU: Contacts of Structural Units for 3TMC Structure Factors (4475 Kb) Retrieve 3TMC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TMC from S2C, [Save to disk] Re-refined 3tmc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TMC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TMC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TMC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tmc_B] [3tmc] [3tmc_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3TMC: [HDc ] by SMART

Other resources with information on 3TMC

Community annotation for 3TMC at PDBWiki (http://pdbwiki.org)

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