3TQJ Oxidoreductase date Sep 09, 2011
title Structure Of The Superoxide Dismutase (Fe) (Sodb) From Coxie Burnetii
authors M.C.Franklin, J.Cheung, M.Cassidy, J.Love
compound source
Molecule: Superoxide Dismutase [Fe]
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Coxiella Burnetii
Organism_taxid: 777
Strain: Rsa 493 Nine Mile Phase I
Gene: Cbu_1708, Sodb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.102 65.285 110.069 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FE2 enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene CBU
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...


    • Primary referenceStructural Genomics for Drug Design against the Pathogen Coxiella burnetii., Franklin MC, Cheung J, Rudolph MJ, Burshteyn F, Cassidy M, Gary E, Hillerich B, Yao ZK, Carlier PR, Totrov M, Love JD, Proteins. 2015 Jun 1. doi: 10.1002/prot.24841. PMID:26033498
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (3tqj.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 3TQJ
  • CSU: Contacts of Structural Units for 3TQJ
  • Structure Factors (367 Kb)
  • Retrieve 3TQJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TQJ from S2C, [Save to disk]
  • Re-refined 3tqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TQJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TQJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TQJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tqj_A] [3tqj] [3tqj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3TQJ
  • Community annotation for 3TQJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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