3TS3 Viral Protein date Sep 12, 2011
title Crystal Structure Of The Projection Domain Of The Turkey Ast Capsid Protein At 1.5 Angstrom Resolution
authors R.M.Dubois, S.Schultz-Cherry, S.W.White
compound source
Molecule: Capsid Polyprotein
Chain: A, B, C, D
Fragment: Projection Domain, Unp Residues 423-630
Engineered: Yes
 Organism_scientific: Turkey Astrovirus 2
Organism_common: Tastv-2
Organism_taxid: 246343
Strain: Strain 2
Gene: Orf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet52b
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.487 127.878 71.007 90.00 104.49 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand SO4 enzyme
note 3TS3 is a representative structure
Primary referenceCrystal structure of the avian astrovirus capsid spike., DuBois RM, Freiden P, Marvin S, Reddivari M, Heath RJ, White SW, Schultz-Cherry S, J Virol. 2013 Jul;87(14):7853-63. doi: 10.1128/JVI.03139-12. Epub 2013 May 8. PMID:23658448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3ts3.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (3ts3.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3TS3
  • CSU: Contacts of Structural Units for 3TS3
  • Structure Factors (1881 Kb)
  • Retrieve 3TS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TS3 from S2C, [Save to disk]
  • Re-refined 3ts3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TS3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TS3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ts3_A] [3ts3_B] [3ts3_D] [3ts3_C] [3ts3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3TS3
  • Community annotation for 3TS3 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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