3TV6	Transferase Transferase Inhibitor	date	Sep 19, 2011
title	Human B-Raf Kinase Domain In Complex With A Methoxypyrazolop Benzamide Inhibitor
authors	W.C.Voegtli, H.L.Sturgis, W.I.Wu
compound		source
Molecule: Serinethreonine-Protein Kinase B-Raf Chain: A, B Fragment: Unp Residues 432-726 Synonym: Proto-Oncogene B-Raf, P94, V-Raf Murine Sarcoma Vi Oncogene Homolog B1; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_strain: Hi5
symmetry	Space Group: P 41 21 2	R_factor 0.237 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.440 108.440 150.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	B0R	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Pyrazolopyridine Inhibitors of B-Raf(V600E). Part 1: The Development of Selective, Orally Bioavailable, and Efficacious Inhibitors., Wenglowsky S, Ren L, Ahrendt KA, Laird ER, Aliagas I, Alicke B, Buckmelter AJ, Choo EF, Dinkel V, Feng B, Gloor SL, Gould SE, Gross S, Gunzner-Toste J, Hansen JD, Hatzivassiliou G, Liu B, Malesky K, Mathieu S, Newhouse B, Raddatz NJ, Ran Y, Rana S, Randolph N, Risom T, Rudolph J, Savage S, Selby LT, Shrag M, Song K, Sturgis HL, Voegtli WC, Wen Z, Willis BS, Woessner RD, Wu WI, Young WB, Grina J, ACS Med Chem Lett. 2011 Mar 8;2(5):342-7. doi: 10.1021/ml200025q. eCollection, 2011 May 12. PMID:24900315

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (3tv6.pdb1.gz) 44 Kb Biological Unit Coordinates (3tv6.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 3TV6 CSU: Contacts of Structural Units for 3TV6 Structure Factors (275 Kb) Retrieve 3TV6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TV6 from S2C, [Save to disk] Re-refined 3tv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TV6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TV6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TV6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tv6] [3tv6_B] [3tv6_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3TV6: [STYKc ] by SMART

Other resources with information on 3TV6

Community annotation for 3TV6 at PDBWiki (http://pdbwiki.org)

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