OCA Atlas for 3U0D

3U0D

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, DBH, FE

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B

Primary reference

Siderocalin/Lcn2/NGAL/24p3 does not drive apoptosis through gentisic acid mediated iron withdrawal in hematopoietic cell lines., Correnti C, Richardson V, Sia AK, Bandaranayake AD, Ruiz M, Suryo Rahmanto Y, Kovacevic Z, Clifton MC, Holmes MA, Kaiser BK, Barasch J, Raymond KN, Richardson DR, Strong RK, PLoS One. 2012;7(8):e43696. doi: 10.1371/journal.pone.0043696. Epub 2012 Aug 21. PMID:22928018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]

Biological Unit Coordinates (3u0d.pdb1.gz) 60 Kb

Biological Unit Coordinates (3u0d.pdb2.gz) 61 Kb

Biological Unit Coordinates (3u0d.pdb3.gz) 60 Kb

Biological Unit Coordinates (3u0d.pdb4.gz) 60 Kb

LPC: Ligand-Protein Contacts for 3U0D

CSU: Contacts of Structural Units for 3U0D

Structure Factors (884 Kb)

Retrieve 3U0D in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3U0D from S2C, [Save to disk]

Re-refined 3u0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U0D in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u0d] [3u0d_A] [3u0d_B] [3u0d_C] [3u0d_D]

SWISS-PROT database:

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