3U0V Hydrolase date Sep 29, 2011
title Crystal Structure Analysis Of Human Lyplal1
authors M.Burger, T.J.Zimmermann, Y.Kondoh, P.Stege, N.Watanabe, H.Osada, H.Waldmann, I.R.Vetter
compound source
Molecule: Lysophospholipase-Like Protein 1
Chain: A
Ec: 3.1.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyplal1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon +Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 4t1
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.782 60.778 76.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand
enzyme Hydrolase E.C.3.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the predicted phospholipase LYPLAL1 reveals unexpected functional plasticity in spite of close relationship to acyl protein thioesterases., Burger M, Zimmermann TJ, Kondoh Y, Stege P, Watanabe N, Osada H, Waldmann H, Vetter IR, J Lipid Res. 2011 Nov 3. PMID:22052940
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3u0v.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 3U0V
  • Structure Factors (383 Kb)
  • Retrieve 3U0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U0V from S2C, [Save to disk]
  • Re-refined 3u0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U0V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u0v_A] [3u0v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U0V
  • Community annotation for 3U0V at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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