3U1Y Hydrolase Hydrolase Inhibitor date Sep 30, 2011
title Potent Inhibitors Of Lpxc For The Treatment Of Gram-Negative Infections
authors M.Brown, J.Abramite, S.Liu
compound source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase;
Chain: A, B
Synonym: Protein Enva, Udp-3-O-Acyl-Glcnac Deacetylase
Ec: 3.5.1.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Lpxc, Enva, Pa4406
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.995 70.396 219.617 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 03I, ZN enzyme Hydrolase E.C.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePotent Inhibitors of LpxC for the Treatment of Gram-Negative Infections., Brown MF, Reilly U, Abramite JA, Arcari JT, Oliver R, Barham RA, Che Y, Chen JM, Collantes EM, Chung SW, Desbonnet C, Doty J, Doroski M, Engtrakul JJ, Harris TM, Huband M, Knafels J, Leach KL, Liu S, Marfat A, Marra A, McElroy E, Melnick M, Menard CA, Montgomery JI, Mulllins L, Noe MC, O'Donnell J, Penzien J, Plummer MS, Price LM, Shanmugasundaram V, Thoma C, Uccello D, Warmus J, Wishka DG, J Med Chem. 2011 Dec 18. PMID:22175825
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (3u1y.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (3u1y.pdb2.gz) 99 Kb
  • Biological Unit Coordinates (3u1y.pdb3.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 3U1Y
  • CSU: Contacts of Structural Units for 3U1Y
  • Structure Factors (791 Kb)
  • Retrieve 3U1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U1Y from S2C, [Save to disk]
  • Re-refined 3u1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3U1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U1Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U1Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u1y_A] [3u1y_B] [3u1y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3U1Y
  • Community annotation for 3U1Y at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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