3U4E	Immune System	date	Oct 07, 2011
title	Crystal Structure Of Pg9 Fab In Complex With V1v2 Region Fro Strain Cap45
authors	J.Gorman, J.Mclellan, M.Pancera, P.D.Kwong
compound		source
Molecule: V1v2 Region Of Hiv-1 On 1fd6 Scaffold Chain: G, J Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc8400
Molecule: Pg9 Heavy Chain Chain: H, A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293f Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc8400
Molecule: Pg9 Light Chain Chain: L, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293s Gnti- Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvrc8400
symmetry	Space Group: P 21 21 21	R_factor 0.182 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.026 103.545 186.373 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.19 Å
ligand	BMA, MAN, NAG, PCA, SO4, TYS	enzyme
Gene Ontology	Chain Function Process Component J, G
Primary reference	Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9., McLellan JS, Pancera M, Carrico C, Gorman J, Julien JP, Khayat R, Louder R, Pejchal R, Sastry M, Dai K, O'Dell S, Patel N, Shahzad-Ul-Hussan S, Yang Y, Zhang B, Zhou T, Zhu J, Boyington JC, Chuang GY, Diwanji D, Georgiev I, Do Kwon Y, Lee D, Louder MK, Moquin S, Schmidt SD, Yang ZY, Bonsignori M, Crump JA, Kapiga SH, Sam NE, Haynes BF, Burton DR, Koff WC, Walker LM, Phogat S, Wyatt R, Orwenyo J, Wang LX, Arthos J, Bewley CA, Mascola JR, Nabel GJ, Schief WR, Ward AB, Wilson IA, Kwong PD, Nature. 2011 Nov 23. doi: 10.1038/nature10696. PMID:22113616

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (521 Kb) [Save to disk] Biological Unit Coordinates (3u4e.pdb1.gz) 252 Kb Biological Unit Coordinates (3u4e.pdb2.gz) 262 Kb LPC: Ligand-Protein Contacts for 3U4E CSU: Contacts of Structural Units for 3U4E Structure Factors (1643 Kb) Retrieve 3U4E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U4E from S2C, [Save to disk] Re-refined 3u4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U4E in 3D

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Visual 3D analysis of 3U4E

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U4E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u4e_G] [3u4e_H] [3u4e] [3u4e_J] [3u4e_L] [3u4e_B] [3u4e_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3U4E: [IG_like] [IGv ] by SMART

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