3U4X Carbohydrate-Binding Protein date Oct 10, 2011
title Crystal Structure Of A Lectin From Camptosema Pedicellatum S Complex With 5-Bromo-4-Chloro-3-Indolyl-Alpha-D-Mannose
authors B.A.M.Rocha, C.S.Teixeira, T.R.Moura, H.C.Silva, F.N.Pereira-Jun C.S.Nagano, P.Delatorre, B.S.Cavada
compound source
Molecule: Camptosema Pedicellatum Lectin (Cpl)
Chain: A
Organism_scientific: Camptosema Pedicellatum
Organism_taxid: 232302
Other_details: Seeds
symmetry Space Group: I 2 2 2
R_factor 0.190 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.940 66.780 107.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand CA, MN, XMM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the lectin of Camptosema pedicellatum: implications of a conservative substitution at the hydrophobic subsite., Souza Teixeira C, da Silva HC, de Moura TR, Pereira-Junior FN, do Nascimento KS, Nagano CS, Sampaio AH, Delatorre P, Rocha BA, Cavada BS, J Biochem. 2012 Jul;152(1):87-98. Epub 2012 May 2. PMID:22554687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3u4x.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 3U4X
  • CSU: Contacts of Structural Units for 3U4X
  • Structure Factors (196 Kb)
  • Retrieve 3U4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U4X from S2C, [Save to disk]
  • Re-refined 3u4x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3U4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3U4X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U4X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u4x_A] [3u4x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3U4X
  • Community annotation for 3U4X at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science