3U69	Hydrolase	date	Oct 12, 2011
title	Unliganded Wild-Type Human Thrombin
authors	A.C.Figueiredo, C.C.Clement, M.Philipp, P.J.Barbosa Pereira
compound		source
Molecule: Prothrombin Chain: L Fragment: Unp Residues 334-363 Synonym: Thrombin Light Chain Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Prothrombin Chain: H Fragment: Unp Residues 364-622 Synonym: Thrombin Heavy Chain Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.133 R_Free 0.167
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.555 72.995 83.042 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	BCN, CL, IOD, MPD, MRD, NA, NAG	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component H L
Primary reference	Rational design and characterization of d-phe-pro-d-arg-derived direct thrombin inhibitors., Figueiredo AC, Clement CC, Zakia S, Gingold J, Philipp M, Pereira PJ, PLoS One. 2012;7(3):e34354. Epub 2012 Mar 23. PMID:22457833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (3u69.pdb1.gz) 151 Kb LPC: Ligand-Protein Contacts for 3U69 CSU: Contacts of Structural Units for 3U69 Structure Factors (2435 Kb) Retrieve 3U69 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U69 from S2C, [Save to disk] Re-refined 3u69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U69 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U69

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U69, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u69] [3u69_H] [3u69_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3U69: [Tryp_SPc ] by SMART

Other resources with information on 3U69

Community annotation for 3U69 at PDBWiki (http://pdbwiki.org)

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