3U80 Unknown Function date Oct 14, 2011
title 1.60 Angstrom Resolution Crystal Structure Of A 3-Dehydroqui Dehydratase-Like Protein From Bifidobacterium Longum
authors S.H.Light, G.Minasov, L.Shuvalova, L.Papazisi, A.Lavie, W.F.Ander Center For Structural Genomics Of Infectious Diseases (Csgi
compound source
Molecule: 3-Dehydroquinate Dehydratase, Type II
Chain: A, B
Engineered: Yes
 Organism_scientific: Bifidobacterium Longum
Organism_taxid: 759350
Strain: Jdm301
Gene: Blj_0876
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.004 72.684 81.713 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
note 3U80 is a representative structure
Gene BLJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a type II dehydroquinate dehydratase-like protein from Bifidobacterium longum., Light SH, Krishna SN, Bergan RC, Lavie A, Anderson WF, J Struct Funct Genomics. 2013 Mar;14(1):25-30. doi: 10.1007/s10969-013-9149-7., Epub 2013 Mar 29. PMID:23539270
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3u80.pdb1.gz) 86 Kb
  • CSU: Contacts of Structural Units for 3U80
  • Structure Factors (565 Kb)
  • Retrieve 3U80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3U80 from S2C, [Save to disk]
  • Re-refined 3u80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3U80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3U80
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3U80, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3u80_B] [3u80] [3u80_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3U80
  • Community annotation for 3U80 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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