3U88	Transcription	date	Oct 16, 2011
title	Crystal Structure Of Human Menin In Complex With Mll1 And Le
authors	J.Huang, B.Wan, M.Lei
compound		source
Molecule: Menin Chain: A, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Men1, Scg2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Histone-Lysine N-Methyltransferase 2a Chain: M, N Synonym: Lysine N-Methyltransferase 2a,All-1,Cxxc-Type Zinc Protein 7,Myeloidlymphoid Or Mixed-Lineage Leukemia,Myeloi Or Mixed-Lineage Leukemia Protein 1,Trithorax-Like Protein, Finger Protein Hrx; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kmt2a, All1, Cxxc7, Hrx, Htrx, Mll, Mll1, Trx1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Lens Epithelium-Derived Growth Factor Chain: C, D Synonym: Cll-Associated Antigen Kw-7,Dense Fine Speckles 70 Protein,Dfs 70,Transcriptional Coactivator P75p52; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Psip1, Dfs70, Ledgf, Psip2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 61 2 2	R_factor 0.202 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 187.990 187.990 238.417 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	0BR, CHD, GGB, GLV, SO4	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B M, N
Primary reference	The same pocket in menin binds both MLL and JUND but has opposite effects on transcription., Huang J, Gurung B, Wan B, Matkar S, Veniaminova NA, Wan K, Merchant JL, Hua X, Lei M, Nature. 2012 Feb 12;482(7386):542-6. doi: 10.1038/nature10806. PMID:22327296

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk] Biological Unit Coordinates (3u88.pdb1.gz) 104 Kb Biological Unit Coordinates (3u88.pdb2.gz) 102 Kb LPC: Ligand-Protein Contacts for 3U88 CSU: Contacts of Structural Units for 3U88 Structure Factors (404 Kb) Retrieve 3U88 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U88 from S2C, [Save to disk] Re-refined 3u88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U88 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U88

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U88, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u88_M] [3u88_A] [3u88] [3u88_B] [3u88_C] [3u88_D] [3u88_N] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3U88

Community annotation for 3U88 at PDBWiki (http://pdbwiki.org)

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