3U8M	Acetylcholine-Binding Protein Agonist	date	Oct 17, 2011
title	Crystal Structure Of The Acetylcholine Binding Protein (Achb Lymnaea Stagnalis In Complex With Ns3920 (1-(6-Bromopyridin 4-Diazepane)
authors	L.A.H.Rohde, P.K.Ahring, M.L.Jensen, E.O.Nielsen, D.Peters, C.Hel C.Krintel, K.Harpsoe, M.Gajhede, J.S.Kastrup, T.Balle
compound		source
Molecule: Acetylcholine-Binding Protein Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R Synonym: Ach-Binding Protein, Achbp Engineered: Yes		Organism_scientific: Lymnaea Stagnalis Organism_common: Great Pond Snail Organism_taxid: 6523 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Pfastbac I
symmetry	Space Group: P 21 21 2	R_factor 0.219 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 233.057 268.453 73.259 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	09R, SO4 BindingDB	enzyme
Gene Ontology	Chain Function Process Component S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G
Primary reference	Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha4beta2 receptors: unique role of halogen bonding revealed., Rohde LA, Ahring PK, Jensen ML, Nielsen EO, Peters D, Helgstrand C, Krintel C, Harpsoe K, Gajhede M, Kastrup JS, Balle T, J Biol Chem. 2012 Feb 3;287(6):4248-59. Epub 2011 Dec 13. PMID:22170047

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1263 Kb) [Save to disk] Biological Unit Coordinates (3u8m.pdb1.gz) 318 Kb Biological Unit Coordinates (3u8m.pdb2.gz) 290 Kb Biological Unit Coordinates (3u8m.pdb3.gz) 319 Kb Biological Unit Coordinates (3u8m.pdb4.gz) 317 Kb LPC: Ligand-Protein Contacts for 3U8M CSU: Contacts of Structural Units for 3U8M Structure Factors (6927 Kb) Retrieve 3U8M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3U8M from S2C, [Save to disk] Re-refined 3u8m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3U8M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3U8M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3U8M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3u8m_S] [3u8m_I] [3u8m_K] [3u8m_P] [3u8m_L] [3u8m_C] [3u8m_T] [3u8m_O] [3u8m_J] [3u8m_E] [3u8m] [3u8m_N] [3u8m_R] [3u8m_M] [3u8m_F] [3u8m_G] [3u8m_Q] [3u8m_D] [3u8m_B] [3u8m_A] [3u8m_H] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3U8M

Community annotation for 3U8M at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---