3UB4	Immune System	date	Oct 23, 2011
title	S180l Variant Of Tir Domain Of Maltirap
authors	Y.Shen, Z.Lin
compound		source
Molecule: Tollinterleukin-1 Receptor Domain-Containing Ada Protein; Chain: A Fragment: Tir Domain, Unp Residues 78-221 Synonym: Mal, Tir Domain-Containing Adapter Protein, Adapto Wyatt, Myd88 Adapter-Like Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tirap, Mal Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 43 21 2	R_factor 0.226 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.172 87.172 80.980 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	DTV	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into TIR domain specificity of the bridging adaptor Mal in TLR4 signaling., Lin Z, Lu J, Zhou W, Shen Y, PLoS One. 2012;7(4):e34202. Epub 2012 Apr 2. PMID:22485159

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk] Biological Unit Coordinates (3ub4.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 3UB4 CSU: Contacts of Structural Units for 3UB4 Structure Factors (85 Kb) Retrieve 3UB4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UB4 from S2C, [Save to disk] Re-refined 3ub4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UB4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UB4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UB4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ub4_A] [3ub4] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3UB4: [TIR ] by SMART

Other resources with information on 3UB4

Community annotation for 3UB4 at PDBWiki (http://pdbwiki.org)

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