3UBA Oxidoreductase date Oct 24, 2011
title Crystal Structure Of The Complex Of Bovine Lactoperoxidase W Hydroxycinnamic Acid At 2.6 A Resolution
authors N.Pandey, A.K.Singh, R.P.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Sin
compound source
Molecule: Lactoperoxidase
Chain: A
Fragment: Unp Residues 118-712
Synonym: Lpo
Ec: 1.11.1.7
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1 21 1
R_factor 0.219 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.050 80.230 76.100 90.00 103.33 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand CA, EDO, GOL, HC4, HEM, IOD, NAG, PEG, SCN, SEP enzyme Oxidoreductase E.C.1.11.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3uba.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3UBA
  • CSU: Contacts of Structural Units for 3UBA
  • Structure Factors (951 Kb)
  • Retrieve 3UBA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UBA from S2C, [Save to disk]
  • Re-refined 3uba structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UBA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UBA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UBA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uba_A] [3uba]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UBA
  • Community annotation for 3UBA at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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