3UBP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2PA, ACE, KCX, NI enzyme
related structures by homologous chain: 1EJW, 1UBP, 2UBP
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceA new proposal for urease mechanism based on the crystal structures of the native and inhibited enzyme from Bacillus pasteurii: why urea hydrolysis costs two nickels., Benini S, Rypniewski WR, Wilson KS, Miletti S, Ciurli S, Mangani S, Structure Fold Des 1999 Feb 15;7(2):205-16. PMID:10368287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3ubp.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (3ubp.pdb2.gz) 401 Kb
  • LPC: Ligand-Protein Contacts for 3UBP
  • CSU: Contacts of Structural Units for 3UBP
  • Likely Quarternary Molecular Structure file(s) for 3UBP
  • Structure Factors (622 Kb)
  • Retrieve 3UBP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UBP from S2C, [Save to disk]
  • Re-refined 3ubp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UBP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ubp] [3ubp_A] [3ubp_B] [3ubp_C]
  • SWISS-PROT database: [P41020] [P41021] [P41022]

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