3UCB Hydrolase Hydrolase Inhibitor date Oct 26, 2011
title Crystal Structure Of Multidrug Resistant Hiv-1 Protease Clin Isolate Pr20 In Complex With Darunavir
authors J.Agniswamy, S.Chen-Hsiang, A.Aniana, J.M.Sayer, J.M.Louis, I.T.W
compound source
Molecule: Protease
Chain: A, B
Fragment: Unp Residues 501-599
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.640 65.667 94.032 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.38 Å
ligand 017 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHIV-1 Protease with 20 Mutations Exhibits Extreme Resistance to Clinical Inhibitors through Coordinated Structural Rearrangements., Agniswamy J, Shen CH, Aniana A, Sayer JM, Louis JM, Weber IT, Biochemistry. 2012 Mar 20. PMID:22404139
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3ucb.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3UCB
  • CSU: Contacts of Structural Units for 3UCB
  • Structure Factors (287 Kb)
  • Retrieve 3UCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UCB from S2C, [Save to disk]
  • Re-refined 3ucb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UCB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UCB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ucb_A] [3ucb] [3ucb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UCB
  • Community annotation for 3UCB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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