3UF5 Cytokine date Oct 31, 2011
title Crystal Structure Of The Mouse Colony-Stimulating Factor 1 ( Cytokine
authors J.Elegheert, N.Bracke, A.Bekaert, S.N.Savvides
compound source
Molecule: Macrophage Colony-Stimulating Factor 1
Chain: A, B
Fragment: Unp Residues 33-181
Synonym: Csf-1, Mcsf, Processed Macrophage Colony-Stimulati 1;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Csf1, Csfm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codonplus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.320 68.690 144.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAllosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1., Elegheert J, Bracke N, Pouliot P, Gutsche I, Shkumatov AV, Tarbouriech N, Verstraete K, Bekaert A, Burmeister WP, Svergun DI, Lambrecht BN, Vergauwen B, Savvides SN, Nat Struct Mol Biol. 2012 Sep;19(9):938-47. doi: 10.1038/nsmb.2367. Epub 2012 Aug, 19. PMID:22902366
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3uf5.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3UF5
  • CSU: Contacts of Structural Units for 3UF5
  • Structure Factors (71 Kb)
  • Retrieve 3UF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UF5 from S2C, [Save to disk]
  • Re-refined 3uf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UF5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UF5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uf5_A] [3uf5] [3uf5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UF5
  • Community annotation for 3UF5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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