3UHM Hydrolase Hydrolase Inhibitor date Nov 03, 2011
title Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase Complex With Inhibitor
authors J.Montgomery, S.Liu
compound source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase;
Chain: A
Synonym: Protein Enva, Udp-3-O-Acyl-Glcnac Deacetylase
Ec: 3.5.1.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Lpxc, Enva, Pa4406
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.138 80.965 49.779 90.00 95.50 90.00
method X-Ray Diffractionresolution 1.26 Å
ligand EDO, GAI, RFN, ZN enzyme Hydrolase E.C.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePyridone Methylsulfone Hydroxamate LpxC Inhibitors for the Treatment of Serious Gram-Negative Infections., Montgomery JI, Brown MF, Reilly U, Price LM, Abramite JA, Arcari J, Barham RA, Che Y, Chen JM, Chung SW, Collantes EM, Desbonnet C, Doroski M, Doty J, Engtrakul JJ, Harris TM, Huband M, Knafels JD, Leach KL, Liu S, Marfat A, McAllister LA, McElroy E, Menard C, Mitton-Fry M, Mullins L, Noe MC, O'Donnell JP, Oliver R, Penzien J, Plummer M, Shanmugasundaram V, Thoma C, Tomaras AP, Uccello DP, Vaz AD, Wishka DG, J Med Chem. 2012 Jan 18. PMID:22257165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3uhm.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3UHM
  • CSU: Contacts of Structural Units for 3UHM
  • Structure Factors (1021 Kb)
  • Retrieve 3UHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UHM from S2C, [Save to disk]
  • Re-refined 3uhm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UHM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UHM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uhm] [3uhm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UHM
  • Community annotation for 3UHM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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