3UIH Apoptosis Apoptosis Inhibitor date Nov 04, 2011
title Crystal Structure Of Human Survivin In Complex With Smacdia Peptide
authors J.Du, D.J.Patel
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 5
Chain: A, B
Fragment: Unp Residues 1-142
Synonym: Apoptosis Inhibitor 4, Apoptosis Inhibitor Survivi
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc5, Api4, Iap4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Sumo

Molecule: Diablo Homolog, Mitochondrial
Chain: P, Q
Fragment: Unp Residues 1-15
Synonym: Direct Iap-Binding Protein With Low Pi, Second Mit Derived Activator Of Caspase, Smac;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.246 71.308 81.095 90.00 127.49 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin., Du J, Kelly AE, Funabiki H, Patel DJ, Structure. 2012 Jan 11;20(1):185-95. PMID:22244766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (3uih.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 3UIH
  • CSU: Contacts of Structural Units for 3UIH
  • Structure Factors (312 Kb)
  • Retrieve 3UIH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UIH from S2C, [Save to disk]
  • Re-refined 3uih structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UIH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UIH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UIH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uih] [3uih_Q] [3uih_P] [3uih_B] [3uih_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UIH: [BIR ] by SMART
  • Other resources with information on 3UIH
  • Community annotation for 3UIH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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