3UIO Ligase Isomerase Protein Binding date Nov 05, 2011
title Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain Ranbp2 Containing Ir2 Motif II
authors J.R.Gareau, D.Reverter, C.D.Lima
compound source
Molecule: Sumo-Conjugating Enzyme Ubc9
Chain: A
Synonym: Sumo-Protein Ligase, Ubiquitin Carrier Protein 9, Carrier Protein I, Ubiquitin-Conjugating Enzyme E2 I, Ubiqu Protein Ligase I, P18;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubc9, Ubce9, Ube2i
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Small Ubiquitin-Related Modifier 2
Chain: B
Fragment: Unp Residues 14-93
Synonym: Sumo-2, Hsmt3, Smt3 Homolog 2, Sumo-3, Sentrin-2, Like Protein Smt3a, Smt3a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smt3a, Smt3h2, Sumo2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Ran Gtpase-Activating Protein 1
Chain: C
Fragment: Unp Residues 419-587
Synonym: Rangap1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1835, Rangap1, Sd
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psmt3

Molecule: E3 Sumo-Protein Ligase Ranbp2
Chain: D
Fragment: Unp Residues 2631-2695
Synonym: 358 Kda Nucleoporin, Nuclear Pore Complex Protein Nucleoporin Nup358, Ran-Binding Protein 2, Ranbp2, P270;
Engineered: Yes
Mutation: Yes
Other_details: Motif II Of Ranbp2 Ir1 Was Mutated To Ir2 Mo

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup358, Ranbp2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psmt3
symmetry Space Group: P 32 2 1
R_factor 0.204 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.351 151.351 57.442 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CSD enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • SUMO conjugating enzyme acti...


  • C


    Primary referenceDeterminants of SUMO1 specificity, E3 ligase and SUMO-RanGAP1 binding activities of the nucleoporin RanBP2., Gareau JR, Reverter D, Lima CD, J Biol Chem. 2011 Dec 22. PMID:22194619
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3uio.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3UIO
  • CSU: Contacts of Structural Units for 3UIO
  • Structure Factors (302 Kb)
  • Retrieve 3UIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UIO from S2C, [Save to disk]
  • Re-refined 3uio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UIO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UIO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uio_B] [3uio_C] [3uio_D] [3uio] [3uio_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UIO: [UBCc] [UBQ ] by SMART
  • Other resources with information on 3UIO
  • Community annotation for 3UIO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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