3UJ4 Signaling Protein date Nov 07, 2011
title Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate Re
authors M.Ikura, M.D.Seo, N.Ishiyama, P.Stathopulos
compound source
Molecule: Inositol 1,4,5-Trisphosphate Receptor Type 1
Chain: A, B
Synonym: Ip-3-R, Ip3r 1, Insp3r1, Type 1 Inositol 1,4,5-Tri Receptor, Type 1 Insp3 Receptor;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Gene: Itpr1, Insp3r
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
symmetry Space Group: P 1
R_factor 0.208 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.108 77.191 101.509 105.36 99.98 101.04
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional conservation of key domains in InsP(3) and ryanodine receptors., Seo MD, Velamakanni S, Ishiyama N, Stathopulos PB, Rossi AM, Khan SA, Dale P, Li C, Ames JB, Ikura M, Taylor CW, Nature. 2012 Jan 29. doi: 10.1038/nature10751. PMID:22286060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (3uj4.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (3uj4.pdb2.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 3UJ4
  • CSU: Contacts of Structural Units for 3UJ4
  • Structure Factors (511 Kb)
  • Retrieve 3UJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UJ4 from S2C, [Save to disk]
  • Re-refined 3uj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UJ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UJ4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uj4] [3uj4_A] [3uj4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UJ4: [MIR ] by SMART
  • Other resources with information on 3UJ4
  • Community annotation for 3UJ4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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