3UKR Structural Protein date Nov 09, 2011
title Crystal Structure Of Bos Taurus Arp23 Complex With Bound In Ck-666
authors B.J.Nolen, M.Han
compound source
Molecule: Actin-Related Protein 3
Chain: A
Synonym: Actin-2, Actin-Like Protein 3
 Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: Actin-Related Protein 2
Chain: B
Synonym: Actin-Like Protein 2
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: Actin-Related Protein 23 Complex Subunit 1b
Chain: C
Synonym: Arp23 Complex 41 Kda Subunit, P41-Arc
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: Actin-Related Protein 23 Complex Subunit 2
Chain: D
Synonym: Arp23 Complex 34 Kda Subunit, P34-Arc
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: Actin-Related Protein 23 Complex Subunit 3
Chain: E
Synonym: Arp23 Complex 21 Kda Subunit, P21-Arc
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: Actin-Related Protein 23 Complex Subunit 4
Chain: F
Synonym: Arp23 Complex 20 Kda Subunit, P20-Arc
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913

Molecule: Actin-Related Protein 23 Complex Subunit 5
Chain: G
Synonym: Arp23 Complex 16 Kda Subunit, P16-Arc
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.186 129.692 204.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand CKH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


Primary referenceStructural characterization and computer-aided optimization of a small-molecule inhibitor of the Arp2/3 complex, a key regulator of the actin cytoskeleton., Baggett AW, Cournia Z, Han MS, Patargias G, Glass AC, Liu SY, Nolen BJ, ChemMedChem. 2012 Jul;7(7):1286-94. doi: 10.1002/cmdc.201200104. Epub 2012 May, 23. PMID:22623398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (3ukr.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 3UKR
  • CSU: Contacts of Structural Units for 3UKR
  • Structure Factors (1129 Kb)
  • Retrieve 3UKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UKR from S2C, [Save to disk]
  • Re-refined 3ukr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UKR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UKR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ukr_F] [3ukr] [3ukr_G] [3ukr_D] [3ukr_B] [3ukr_A] [3ukr_C] [3ukr_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3UKR: [ACTIN] [WD40 ] by SMART
    • Other resources with information on 3UKR
  • Community annotation for 3UKR at PDBWiki (http://pdbwiki.org)

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