3UN8 Hydrolase Hydrolase Inhibtior date Nov 15, 2011
title Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
authors E.Huber, M.Basler, R.Schwab, W.Heinemeyer, C.Kirk, M.Groettrup, M.
compound source
Molecule: Proteasome Component Y7
Chain: A, O
Synonym: Macropain Subunit Y7, Multicatalytic Endopeptidase Subunit Y7, Proteinase Ysce Subunit 7;
Ec: 3.4.25.1
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Y13
Chain: B, P
Synonym: Macropain Subunit Y13, Multicatalytic Endopeptidas Subunit Y13, Proteinase Ysce Subunit 13;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pre6
Chain: C, Q
Synonym: Macropain Subunit Pre6, Multicatalytic Endopeptida Subunit Pre6, Proteinase Ysce Subunit Pre6;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pup2
Chain: D, R
Synonym: Macropain Subunit Pup2, Multicatalytic Endopeptida Subunit Pup2, Proteinase Ysce Subunit Pup2;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pre5
Chain: E, S
Synonym: Macropain Subunit Pre5, Multicatalytic Endopeptida Subunit Pre5, Proteinase Ysce Subunit Pre5;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component C1
Chain: F, T
Synonym: Macropain Subunit C1, Multicatalytic Endopeptidase Subunit C1, Proteinase Ysce Subunit 1;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component C7-Alpha
Chain: G, U
Synonym: Macropain Subunit C7-Alpha, Multicatalytic Endopep Complex C7, Proteasome Component Y8, Proteinase Ysce Subuni Suppressor Protein;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pup1
Chain: H, V
Synonym: Macropain Subunit Pup1, Multicatalytic Endopeptida Subunit Pup1, Proteinase Ysce Subunit Pup1;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pup3
Chain: I, W
Synonym: Macropain Subunit Pup3, Multicatalytic Endopeptida Subunit Pup3;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component C11
Chain: J, X
Synonym: Macropain Subunit C11, Multicatalytic Endopeptidas Subunit C11, Proteinase Ysce Subunit 11;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pre2
Chain: K, Y
Synonym: Macropain Subunit Pre2, Multicatalytic Endopeptida Subunit Pre2, Proteinase Ysce Subunit Pre2;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component C5
Chain: L, Z
Synonym: Multicatalytic Endopeptidase Complex Subunit C5
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pre4
Chain: M, a
Synonym: Macropain Subunit Pre4, Multicatalytic Endopeptida Subunit Pre4, Proteinase Ysce Subunit Pre4;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Proteasome Component Pre3
Chain: N, b
Synonym: Macropain Subunit Pre3, Multicatalytic Endopeptida Subunit Pre3, Proteinase Ysce Subunit Pre3;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.420 300.420 143.930 90.00 112.83 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 049 enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O

  • proteasome core complex, alp...
    • D, R

  • proteasome core complex, alp...
    • F, T

  • proteasome core complex, alp...
    • G, U

  • proteasome core complex, alp...
    • J, X
  • endopeptidase activator acti...

  • proteasome core complex, bet...
    • K, Y, V, H


    N, b

  • proteasome core complex, bet...
    • P, B

  • proteasome core complex, alp...
    • Q, C


    S, E

  • proteasome core complex, alp...
    • W, I
  • endopeptidase activator acti...

  • proteasome core complex, bet...
    • Z, L


    a, M


    Primary referenceImmuno- and constitutive proteasome crystal structures reveal differences in substrate and inhibitor specificity., Huber EM, Basler M, Schwab R, Heinemeyer W, Kirk CJ, Groettrup M, Groll M, Cell. 2012 Feb 17;148(4):727-38. PMID:22341445
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2062 Kb) [Save to disk]
  • Biological Unit Coordinates (3un8.pdb1.gz) 2051 Kb
  • LPC: Ligand-Protein Contacts for 3UN8
  • CSU: Contacts of Structural Units for 3UN8
  • Structure Factors (2357 Kb)
  • Retrieve 3UN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UN8 from S2C, [Save to disk]
  • Re-refined 3un8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UN8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UN8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3un8_Z] [3un8_T] [3un8_W] [3un8_Y] [3un8_C] [3un8_Q] [3un8_R] [3un8_M] [3un8_O] [3un8_K] [3un8_J] [3un8_U] [3un8_I] [3un8_V] [3un8_H] [3un8_F] [3un8_N] [3un8_a] [3un8_X] [3un8_A] [3un8_E] [3un8_B] [3un8_D] [3un8_P] [3un8_b] [3un8_S] [3un8_G] [3un8_L] [3un8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UN8: [Proteasome_A_N ] by SMART
    • Other resources with information on 3UN8
  • Community annotation for 3UN8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science