3UNF Hydrolase Hydrolase Inhibitor date Nov 15, 2011
title Mouse 20s Immunoproteasome In Complex With Pr-957
authors E.Huber, M.Basler, R.Schwab, W.Heinemeyer, C.Kirk, M.Groettrup, M.
compound source
Molecule: Proteasome Subunit Alpha Type-2
Chain: A, O
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Alpha Type-4
Chain: B, P
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Alpha Type-7
Chain: C, Q
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Alpha Type-5
Chain: D, R
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Alpha Type-1
Chain: E, S
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Alpha Type-3
Chain: F, T
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Alpha Type-6
Chain: G, U
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-10
Chain: H, V
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-3
Chain: I, W
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-2
Chain: J, X
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-8
Chain: K, Y
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-1
Chain: L, Z
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-4
Chain: M, a
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090

Molecule: Proteasome Subunit Beta Type-9
Chain: N, b
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.300 194.600 157.700 90.00 107.10 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 04C, CL, IOD, K enzyme
note 3UNF (Molecule of the Month:pdb166)
Gene
Ontology
ChainFunctionProcessComponent
A, O


D, R


F, T


G, U


J, X


K, Y


N, b


P, B


Q, C


S, E


V, H


W, I


Z, L


a, M


Primary referenceImmuno- and constitutive proteasome crystal structures reveal differences in substrate and inhibitor specificity., Huber EM, Basler M, Schwab R, Heinemeyer W, Kirk CJ, Groettrup M, Groll M, Cell. 2012 Feb 17;148(4):727-38. PMID:22341445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2058 Kb) [Save to disk]
  • Biological Unit Coordinates (3unf.pdb1.gz) 2043 Kb
  • LPC: Ligand-Protein Contacts for 3UNF
  • CSU: Contacts of Structural Units for 3UNF
  • Structure Factors (1234 Kb)
  • Retrieve 3UNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UNF from S2C, [Save to disk]
  • Re-refined 3unf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UNF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UNF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3unf_B] [3unf_R] [3unf_S] [3unf_Q] [3unf_L] [3unf_b] [3unf_U] [3unf_O] [3unf_G] [3unf_M] [3unf_a] [3unf_J] [3unf_Z] [3unf_W] [3unf_C] [3unf_V] [3unf_K] [3unf_F] [3unf_A] [3unf_I] [3unf_P] [3unf_N] [3unf_T] [3unf] [3unf_X] [3unf_H] [3unf_Y] [3unf_E] [3unf_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UNF: [Proteasome_A_N ] by SMART
    • Other resources with information on 3UNF
  • Community annotation for 3UNF at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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