3UQA Isomerase, Protein Binding date Nov 19, 2011
title Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans With Surface Mutation A54e From Burkholderia Pseudomallei C With Fk506
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Ubiquitin-Like Protein Smt3, Peptidyl-Prolyl Cis- Isomerase;
Chain: A
Fragment: Q12306 Residues 13-98, Q3jk38 Residues 2-113
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Other_details: Fusion Protein
Organism_scientific: Saccharomyces Cerevisiae, Burkholderia Pseudomallei;
Organism_common: Baker'S Yeast
Organism_taxid: 559292, 320372
Strain: 1710b, S288c
Gene: Burps1710b_a0907, Smt3, Ydr510w, D9719.15
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Hissmt
symmetry Space Group: C 1 2 1
R_factor 0.182 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.310 31.280 74.320 90.00 121.57 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CL, FK5, PEG enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene BURPS1710B
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidyl-prolyl cis-trans is...


  • Primary referenceA structural biology approach enables the development of antimicrobials targeting bacterial immunophilins., Begley DW, Fox D 3rd, Jenner D, Juli C, Pierce PG, Abendroth J, Muruthi M, Safford K, Anderson V, Atkins K, Barnes SR, Moen SO, Raymond AC, Stacy R, Myler PJ, Staker BL, Harmer NJ, Norville IH, Holzgrabe U, Sarkar-Tyson M, Edwards TE, Lorimer DD, Antimicrob Agents Chemother. 2014 Mar;58(3):1458-67. doi: 10.1128/AAC.01875-13., Epub 2013 Dec 23. PMID:24366729
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3uqa.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3UQA
  • CSU: Contacts of Structural Units for 3UQA
  • Structure Factors (401 Kb)
  • Retrieve 3UQA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UQA from S2C, [Save to disk]
  • Re-refined 3uqa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UQA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UQA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UQA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uqa] [3uqa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3UQA: [UBQ ] by SMART
  • Other resources with information on 3UQA
  • Community annotation for 3UQA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science