3UQD Transferase date Nov 20, 2011
title Crystal Structure Of The Phosphofructokinase-2 From Escheric In Complex With Substrates And Products
authors H.M.Pereira, A.Caniuguir, M.Baez, R.Cabrera, J.Babul
compound source
Molecule: 6-Phosphofructokinase Isozyme 2
Chain: A, B, C, D
Synonym: Phosphofructokinase-2
Ec: 2.7.1.11
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B1723, Jw5280, Pfk2, Pfkb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21-D
symmetry Space Group: C 2 2 21
R_factor 0.195 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.885 155.189 224.989 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand ADP, ATP, F6P, FBP, MG enzyme Transferase E.C.2.7.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • 6-phosphofructokinase activi...
  • phosphofructokinase activity...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (3uqd.pdb1.gz) 385 Kb
  • LPC: Ligand-Protein Contacts for 3UQD
  • CSU: Contacts of Structural Units for 3UQD
  • Structure Factors (525 Kb)
  • Retrieve 3UQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UQD from S2C, [Save to disk]
  • Re-refined 3uqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UQD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UQD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uqd] [3uqd_C] [3uqd_A] [3uqd_B] [3uqd_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UQD
  • Community annotation for 3UQD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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