3UV4	Transcription	date	Nov 29, 2011
title	Crystal Structure Of The Second Bromodomain Of Human Transcr Initiation Factor Tfiid Subunit 1 (Taf1)
authors	P.Filippakopoulos, S.Picaud, T.Keates, E.Ugochukwu, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, S.Knapp, Stru Genomics Consortium (Sgc)
compound		source
Molecule: Second Bromodomain Of Human Transcription Initiat Tfiid Subunit 1 (Taf1); Chain: A, B Fragment: Unp Residues 1501-1635 Synonym: Cell Cycle Gene 1 Protein, Tbp-Associated Factor 2 P250, Transcription Initiation Factor Tfiid 250 Kda Subunit 250, Tafii-250, Tafii250; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ba2r, Ccg1, Ccgs, Taf1, Taf2a Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.450 57.800 123.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	EDO, GOL, PO4	enzyme	Transferase E.C.2.7.11.1 BRENDA
note	3UV4 is a representative structure
Primary reference	Histone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3uv4.pdb1.gz) 45 Kb Biological Unit Coordinates (3uv4.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 3UV4 CSU: Contacts of Structural Units for 3UV4 Structure Factors (477 Kb) Retrieve 3UV4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UV4 from S2C, [Save to disk] Re-refined 3uv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UV4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UV4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UV4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uv4_B] [3uv4_A] [3uv4] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3UV4: [BROMO ] by SMART

Other resources with information on 3UV4

Community annotation for 3UV4 at PDBWiki (http://pdbwiki.org)

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