3UVX	Transcription Protein Binding	date	Nov 30, 2011
title	Crystal Structure Of The First Bromodomain Of Human Brd4 In With A Diacetylated Histone 4 Peptide (H4k12ack16ac)
authors	P.Filippakopoulos, S.Picaud, T.Keates, E.Ugochukwu, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, S.Knapp, Stru Genomics Consortium (Sgc)
compound		source
Molecule: Bromodomain-Containing Protein 4 Chain: A Fragment: Unp Residues 44-168 Synonym: Protein Hunk1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Brd4, Hunk1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
Molecule: Diacetylated Histone 4 Peptide Chain: B Synonym: Peptide (H4k12ack16ac) Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 Other_details: Human Histone 4 Peptide (Uniprot: P62805) Re 11-21 Acetylated On K12 And K16
symmetry	Space Group: P 21 21 21	R_factor 0.167 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.940 52.380 57.620 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.91 Å
ligand	ALY, EDO, FMT, NA	enzyme
Primary reference	Histone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (3uvx.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3UVX CSU: Contacts of Structural Units for 3UVX Structure Factors (154 Kb) Retrieve 3UVX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3UVX from S2C, [Save to disk] Re-refined 3uvx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3UVX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3UVX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3UVX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3uvx] [3uvx_A] [3uvx_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3UVX: [BROMO ] by SMART

Other resources with information on 3UVX

Community annotation for 3UVX at PDBWiki (http://pdbwiki.org)

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