3UX1 Virus date Dec 03, 2011
title Structural Characterization Of Adeno-Associated Virus Seroty
authors M.A.Dimattia, H.J.Nam, K.Van Vliet, M.Mitchell, A.Mccall, A.Benn B.Gurda, R.Mckenna, M.Potter, Y.Sakai, B.J.Byrne, N.Muzyczka, G.A S.Zolotukhin, N.Olson, R.Sinkovitis, T.S.Baker, M.Agbandje-Mcke
compound source
Molecule: Capsid Protein Vp1
Chain: A
Fragment: Unp Residues 219-736
Engineered: Yes
 Organism_scientific: Adeno-Associated Virus 9
Organism_taxid: 235455
Gene: Cap
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 32
R_factor 0.283 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
250.680 250.680 632.920 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into the unique properties of Adeno-Associated Virus Serotype 9., Dimattia MA, Nam HJ, Van Vliet K, Mitchell M, Bennett A, Gurda BL, McKenna R, Olson NH, Sinkovits RS, Potter M, Byrne BJ, Aslanidi G, Zolotukhin S, Muzyczka N, Baker TS, Agbandje-McKenna M, J Virol. 2012 Apr 11. PMID:22496238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3ux1.pdb1.gz) 4901 Kb
  • CSU: Contacts of Structural Units for 3UX1
  • Structure Factors (13481 Kb)
  • Retrieve 3UX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UX1 from S2C, [Save to disk]
  • Re-refined 3ux1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3UX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3UX1
  • VIPERdb: visual, structural and computational analysis of 3UX1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3UX1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ux1] [3ux1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3UX1
  • Community annotation for 3UX1 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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