3UY8 Lyase date Dec 06, 2011
title Designed Protein Ke59 R5_115f
authors O.Khersonsky, G.Kiss, D.Roethlisberger, O.Dym, S.Albeck, K.N.Houk D.S.Tawfik, Israel Structural Proteomics Center (Ispc)
compound source
Molecule: Kemp Eliminase Ke59 R5_115f
Chain: A, B
Ec: 4.-.-.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.215 R_Free 0.299
length a length b length c angle alpha angle beta angle gamma
87.961 102.727 66.296 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.41 Å
ligand SO4 enzyme Lyase E.C.4 BRENDA
A, B

Primary referenceBridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59., Khersonsky O, Kiss G, Rothlisberger D, Dym O, Albeck S, Houk KN, Baker D, Tawfik DS, Proc Natl Acad Sci U S A. 2012 Jun 8. PMID:22685214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3uy8.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3uy8.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3UY8
  • CSU: Contacts of Structural Units for 3UY8
  • Structure Factors (354 Kb)
  • Retrieve 3UY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3UY8 from S2C, [Save to disk]
  • Re-refined 3uy8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3UY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3UY8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3UY8, from MSDmotif at EBI
  • Fold representative 3uy8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3uy8_B] [3uy8_A] [3uy8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3UY8
  • Community annotation for 3UY8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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