3V0U Oxidoreductase date Dec 08, 2011
title Crystal Structure Of Perakine Reductase, Founder Member Of A Subfamily With Unique Conformational Changes During Nadph B
authors L.Sun, Y.Chen, C.Rajendran, S.Panjikar, U.Mueller, M.Wang, C.Rosen R.Mindnich, T.M.Penning, J.Stoeckigt
compound source
Molecule: Perakine Reductase
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Rauvolfia Serpentina
Organism_common: Devilpepper
Organism_taxid: 4060
Gene: Pr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.212 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.102 93.650 143.077 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of perakine reductase, founding member of a novel aldo-keto reductase (AKR) subfamily that undergoes unique conformational changes during NADPH binding., Sun L, Chen Y, Rajendran C, Mueller U, Panjikar S, Wang M, Mindnich R, Rosenthal C, Penning TM, Stockigt J, J Biol Chem. 2012 Mar 30;287(14):11213-21. Epub 2012 Feb 13. PMID:22334702
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3v0u.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (3v0u.pdb2.gz) 182 Kb
  • CSU: Contacts of Structural Units for 3V0U
  • Structure Factors (306 Kb)
  • Retrieve 3V0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V0U from S2C, [Save to disk]
  • Re-refined 3v0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3V0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3V0U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V0U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v0u] [3v0u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3V0U
  • Community annotation for 3V0U at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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